91猎奇

Abdulmelik Mohammed is an Assistant Professor at the Department of Biomedical Engineering whose research focuses on the computational modeling and analysis of natural and synthetic biomolecular systems. He obtained his Doctor of Science from Aalto University, Finland where his dissertation on the algorithmic design of biomolecular nanostructures won the School of Science dissertation award. Before joining 91猎奇, he was a postdoc in the Department of Mathematics and Statistics at the University of South Florida.

Research Interests

Computational modeling, design and analysis of biomolecular systems, biomolecular
nanotechnology, computational genomics.

Email

Preferred: abdulmelik.mohammed@sjsu.edu

Telephone

Preferred: 408-924-3833

Education

• Doctor of Science (Technology, Aalto University, Finland)
• Master of Science (Technology, Aalto University, Finland)
• Bachelor of Engineering (Metropolia University of Applied Sciences, Finland)

Bio

Research in Progress

• W. Wang, A. Mohammed, Rong Chen, Antti Elonen, Silian Chen, Mengfan Tian,
  Ye Xiang, P. Orponen, B. Wei. Automated design of scaffold-free wireframe DNA
  nanostructures. Submitted to Nature Communications. (2024)

• J. Nguyen, M. Vu2, E. Benson, Abdulmelik Mohammed.  Automated design of toroidal DNA origami. (2024)

• A. Mohammed, R. V. Miller, J. S. Khurana, Y. Feng, R. Neme, L. Landweber,
  M. Saito, N. Jonoska. Clustering analysis of genome-rearrangement dynamics in
  Oxytricha trifallax. (2024)
• Deepali Kundnani, Tejasvi Channagiri, Francisco Martinez, Penghao Xu, Margherita
  Maria Ferrari, A. Mohammed, Nata藝sa Jonoska, Francesca Storici. Ribonucleotide
  incorporation in human nuclear DNA. (2024)

Grants in Preparation

Identification of cancer-causing mutations in newly sequenced human genomic
regions. Targeting NIH AREA and NIH SuRE-First grants. (2024)

Honors and Awards

• AMS-Simons Travel Grant (2020)
• Aalto University Dissertation Award (2019)
• Nokia Foundation Awards Scholarship (2017)
• Nokia Foundation Awards Scholarship (2015)
• Helsinki Doctoral Education Network in Information and Communications Technology (HICT) Doctoral Student (2014-2018)
• Aalto School of Science Master鈥檚 Thesis Award (2014)
• Honor鈥檚 student in the Department of Computer Science, Aalto University (2011-2013)
• Microsoft Imagine Cup 2010 regional finalist (2010)
• Nokia Siemens Networks Award (for studies in bachelor鈥檚 program) (2009)

Professional Service

• Manuscript referee: Natural Computing, Theoretical Computer Science (TCS),
  DNA Computing and Molecular Programming (DNA), Unconventional Computation
  and Natural Computation (UCNC), Developments in Language Theory (DLT),
  International Journal of Foundations of Computer Science (IJFCS)
• Doctoral dissertation pre-examiner: Frankie Spencer. Efficient simulations of struc-
  tural self-assembly systems.  虋Abo Akademi University,  虋Abo, Finland. (Aug 2024)
• Local organizer: 2022 Southeast Center for Mathematics and Biology (SCMB)
  Workshop on Discrete and Topological Models in Molecular Biology (DTMB).
  University of South Florida, Tampa, Florida. (May 2022)
• Contributed talks judge: Methods for Biological Modeling Subgroup (MFBM),
  session 06. Society for Mathematical Biology Annual Meeting. Virtual. (June 2021)

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